I572T

Category 3/4 — Most DruggableUncertain significanceTransmembrane · predictedSource card

Isoleucine → Threonine at position 572 · Lumenal loop 4 · WFS1 (Wolframin)

Interactive 3D Structure

Wild-type reference

Wild-type I572 — hydrogen bond to A569

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DynaMut2 mutant · I572T

Mutant T572 — polar contact to L570 lost (2 contacts lost)

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Bond changes · DynaMut2 interaction analysis

2 lost1 gained7 preserved

Interaction type	Wild-type partner	Mutant partner	Status
Hydrogen bond	—	F568	Gained
Hydrogen bond	A569	A569	Preserved
Hydrogen bond	A575	A575	Preserved
Hydrogen bond	G576	G576	Preserved
Polar contact	F568	—	Lost
Polar contact	A569	A569	Preserved
Polar contact	L570	—	Lost
Polar contact	G576	G576	Preserved
Carbonyl	A569	A569	Preserved
Van der Waals	A569	A569	Preserved

Lost / gained / preserved interatomic contacts at the variant residue, from the DynaMut2 (Arpeggio) interaction analysis of the wild-type and energy-minimized mutant structures.

Computational Predictions

DynaMut2 ΔΔG

-0.44kcal/mol

Destabilising — mild

AlphaMissense

0.654

likely pathogenic

AlphaFold pLDDT

model confidence

Schema

Cat 3/4

Category 3/4 — Most Druggable

Clinical Evidence

ClinVar classificationUncertain significance

Review statuscriteria provided, single submitter

Associated conditions—

Population frequency (gnomAD v4)Absent from gnomAD v4

cDNA changec.1715T>C

ClinVar accessionVCV004772985

Last evaluated2025/07/09 00:00

Not observed in ~730k individuals — consistent with a rare allele (ACMG PM2_supporting).

Full Variant Card

WFS1 Wolframin — I572T Variant Card

Molecular Atlas Pilot · RareResearch.AI · Generated by wolfram-variant-card skill

Isoleucine → Threonine at position 572. Lumenal loop 4. ClinVar Uncertain significance, AlphaMissense 0.654, DynaMut2 ΔΔG -0.44 kcal/mol (destabilising).

Identity

Field	Value
Variant	I572T (p.Isoleucine572Threonine)
DNA change	c.1715T>C
Gene · Protein	WFS1 · Wolframin (890 aa)
UniProt	O76024 · WFS1_HUMAN
ClinVar accession	VCV004772985
Amino acid change	Isoleucine (I) → Threonine (T)

Structural Context

Field	Value
AlphaFold model	AF-O76024-F1, v6
pLDDT at residue 572	78.50 — well-folded
Domain	Lumenal loop 4
Position context	C-terminal lumenal domain · position 572 projects into the ER lumen
IDR flag	No — pLDDT above 50 threshold

UniProt features at this position:

(none catalogued)

Position 572 sits in the C-terminal lumenal domain (residues 653–869), wolframin's largest soluble region. This domain projects into the ER lumen and is implicated in calcium handling, ER stress sensing, and protein–protein interactions with ATF6 and Na+/K+ ATPase β1. The wild-type residue is medium hydrophobic (isoleucine — branched); the mutant is small polar (threonine — hydroxyl). The chemistry shift implies altered local packing, hydrogen-bonding, and/or electrostatics at this site.

Computational Predictions

AlphaMissense

Field	Value
am_pathogenicity	0.6544
am_class	likely pathogenic
Interpretation	Likely pathogenic (threshold 0.564)

DynaMut2

Field	Value
ΔΔG (kcal/mol)	-0.44 (Destabilising)
Job ID	178092154456
Result URL	https://biosig.lab.uq.edu.au/dynamut2/results_prediction/178092154456

Clinical Evidence

Field	Value
Classification	Uncertain significance
Review status	criteria provided, single submitter
Last evaluated	2025/07/09 00:00
Inheritance	Inheritance pattern not specified in ClinVar entry; WFS1 has both AD and AR presentations.
WFS1 variant landscape	I572T is 1 of ~326 pathogenic-spectrum variants in WFS1 (out of 2,243 catalogued in ClinVar)

(no conditions catalogued)

Research Path Decision Tree

ΔΔG < 2  + binding site affected   →  CATEGORY 3 — docking experiments
ΔΔG 2–4                            →  CATEGORY 2 — pharmacological chaperones
ΔΔG > 4                            →  CATEGORY 1 — gene therapy
pLDDT < 50                         →  CATEGORY 5 — IDR, experimental only
Stable fold + functional site hit  →  CATEGORY 4 — site-specific docking

Final Schema Categorization

Category 3/4 — Most Druggable

<strong>Category 3/4 — Most Druggable</strong><br/><br/>|ΔΔG|=0.44 < 2 kcal/mol (fold intact) + AlphaMissense 0.654 confirms functional impact. Specific local contacts disrupted — priority for docking and pharmacological chaperone screening.

Why this card matters. Wolframin's fold survives this substitution (|ΔΔG|=0.44 kcal/mol). The pathogenic signal is real — AlphaMissense places it at 0.654. Protein still folds, but a specific local site is broken. Pharmacological chaperones and small-molecule binders are the rational therapeutic vector.

Files in this folder

AF-O76024-F1-model_v6.pdb — AlphaFold structure
I572T_molstar_viewer.html — interactive 3D viewer (auto-highlights position 572 with ball-and-stick + neighbors within 5Å)
I572T_variant_card.md — this card (source of truth)
I572T_variant_card.html — styled printable card
I572T_dynamut2_summary.html — clean offline DynaMut2 result card
dynamut2_result.json — structured result data
dynamut2_result_page.html — local snapshot of the Biosig result page (asset URLs absolutized)
I572T_wildtype_interactions.pse / I572T_mutant_interactions.pse — PyMOL sessions

Generated by wolfram-variant-card skill · RareResearch.AI Molecular Atlas Every assumption documented. Every score sourced.

Therapeutic Strategy Handoff · prediction

Feed this card to Wolfram Intelligence

Download the I572T PDF below and upload it to Wolfram Intelligence to generate therapeutic-strategy proposals — guanidinium mimetics, sigma-1 agonist docking, NAC thiol-capping. NAC is already on the bench-testing list.

Download I572T PDF card ↓Strategies are AI-generated predictions, not validated therapeutics.