RareResearch.AI
← Back to atlas

K596R

AlphaMissense: likely benign (0.13)Uncertain significanceTransmembrane · predicted
LysineArginine at position 596 · Cytoplasmic loop 5 / pre-lumenal · WFS1 (Wolframin)

Interactive 3D Structure

Interactive structure
rotate · zoom · variant + 5 Å neighbors
Fullscreen ↗

Computational Predictions

AlphaMissense
0.125
likely benign
AlphaFold pLDDT
62
model confidence
DynaMut2 ΔΔG
pending
not yet computed
ClinVar
Uncertain significance
Uncertain significance

AlphaMissense + AlphaFold card. This variant is mapped from AlphaMissense pathogenicity and AlphaFold confidence. The DynaMut2 ΔΔG stability prediction and the wild-type/mutant structural comparison (dual-pane + bond network) are computed per-variant and backfill here — they require a DynaMut2 submission, unlike the precomputed AlphaMissense score.

Clinical Evidence

ClinVar classificationUncertain significance
Review statuscriteria provided, single submitter
Associated conditions
Population frequency (gnomAD v4)Ultra-rare · AF 0.000068%
cDNA changec.1787A>G
ClinVar accessionVCV003019373
Last evaluated2022/10/28 00:00

Observed at very low frequency in gnomAD.

Full Variant Card

K596R — WFS1 Molecular Atlas Card

Variant type: Missense Substitution: Lysine (K) → Arginine (R) at position 596 Domain context: Cytoplasmic loop 5 / pre-lumenal


AlphaMissense

  • Pathogenicity score: 0.1254
  • Class: likely benign

AlphaFold confidence

  • pLDDT at residue 596: 62.06

DynaMut2 ΔΔG: not yet computed for this variant — AlphaMissense + AlphaFold confidence shown above. Stability ΔΔG and the wild-type/mutant structural comparison backfill behind this note.


Clinical evidence

  • Classification: Uncertain significance
  • Review status: criteria provided, single submitter
  • cDNA change: c.1787A>G
  • ClinVar accession: VCV003019373
  • Last evaluated: 2022/10/28 00:00
  • Submissions: 1

Card generated by wolfram-atlas-batch (missense AlphaMissense mint) on 2026-06-08T02:27:33.647420Z. AlphaMissense (Cheng et al. 2023) · AlphaFold model v6 · UniProt O76024.

Therapeutic Strategy Handoff · prediction

Feed this card to Wolfram Intelligence

Download the K596R PDF below and upload it to Wolfram Intelligence to generate therapeutic-strategy proposals — guanidinium mimetics, sigma-1 agonist docking, NAC thiol-capping. NAC is already on the bench-testing list.

Download K596R PDF card ↓Strategies are AI-generated predictions, not validated therapeutics.