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N714T

Category 3/4 — Most DruggablePathogenicLumenal · predictedσ-1 candidateEditorial
AsparagineThreonine at position 714 · C-terminal lumenal domain (653-869) · WFS1 (Wolframin)

Asparagine → Threonine at position 714 in wolframin's C-terminal lumenal domain. ClinVar Pathogenic, associated with rare genetic deafness. AlphaMissense 0.927, DynaMut2 ΔΔG -0.23 kcal/mol (destabilising). A conservative polar-to-polar substitution with subtle but consequential mechanism.

Interactive 3D Structure

Wild-type reference
Wild-type N714 — hydrogen bond to I767
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DynaMut2 mutant · N714T
Mutant T714 — hydrogen bond to A716 lost (8 contacts lost)
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Bond changes · DynaMut2 interaction analysis

8 lost1 gained5 preserved
Interaction typeWild-type partnerMutant partnerStatus
Hydrogen bondA716Lost
Hydrogen bondE717Lost
Hydrogen bondS718S718Preserved
Hydrogen bondI767Lost
Hydrogen bondD771D771Preserved
Polar contactA716Lost
Polar contactE717Lost
Polar contactS718S718Preserved
Polar contactI767Lost
Polar contactD771D771Preserved
Van der WaalsA716Lost
Van der WaalsE717Lost
Van der WaalsS718Gained
HydrophobicE717E717Preserved

Lost / gained / preserved interatomic contacts at the variant residue, from the DynaMut2 (Arpeggio) interaction analysis of the wild-type and energy-minimized mutant structures.

Computational Predictions

DynaMut2 ΔΔG
-0.23kcal/mol
Destabilising — mild
AlphaMissense
0.927
LPath
AlphaFold pLDDT
87
model confidence
Schema
Cat 3/4
Category 3/4 — Most Druggable

Clinical Evidence

ClinVar classificationPathogenic
Review statuscriteria provided, single submitter
Associated conditionsRare genetic deafness
InheritanceDocumented in association with rare genetic deafness. AD-leaning presentation pattern.
Population frequency (gnomAD v4)Absent from gnomAD v4
cDNA changec.2141A>C
ClinVar accessionVCV000045447
Last evaluated2013/08/15 00:00

Not observed in ~730k individuals — consistent with a rare allele (ACMG PM2_supporting).

Structural Context

Position 714 sits in wolframin's C-terminal lumenal domain. The AlphaFold model places N714 within 5 Å of SER715 (2.4 Å), ASP713 (2.5 Å — likely H-bond partner), PHE770 (4.4 Å, long-range), ALA716 (4.4 Å), and ASP771 (4.7 Å, long-range). The local environment is unusual — two adjacent aspartates in spatial proximity (D713 immediately upstream, D771 across the fold), suggesting N714 sits in a polar interaction network.

The wild-type asparagine's amide carries both H-bond donor (NH2) and acceptor (C=O) capacity. The wild-type N714 likely engages D713 and possibly D771 across the fold through this dual H-bond chemistry.

Replacing asparagine with threonine swaps the amide for a hydroxyl. Threonine's hydroxyl has H-bond donor AND acceptor capacity through the same oxygen, but the geometry differs from asparagine's amide. The H-bond network to D713/D771 reorganizes; some contacts may be preserved, others lost.

The |ΔΔG| of 0.23 is small — the fold barely registers the swap. But AlphaMissense's 0.927 score and the clinical evidence (rare genetic deafness) confirm functional consequence. The mechanism is likely subtle reorganization of the local H-bond network that perturbs partner-protein recognition geometry.

Amino-acid chemistry
Asparagine (N) → Threonine (T) — a polar amide-bearing residue replaced by a polar hydroxyl-bearing residue. Both are small polar, but H-bonding chemistry differs: asparagine has an amide donor/acceptor pair, threonine has a single hydroxyl donor/acceptor.
Position in the protein
C-terminal lumenal domain · position 714 in the ER lumen (pLDDT 87).

Druggability Assessment

Category 3/4 — Most Druggable. |ΔΔG| = 0.23 kcal/mol — fold barely perturbed. AlphaMissense 0.927 confirms pathogenic functional consequence.

The mechanism is reorganization of the H-bond network involving D713 (immediate neighbor) and D771 (longer-range). Therapeutic strategy: site-directed small molecules at the D713-N714-D771 network. The pathogenic mechanism is fine-grained H-bond geometry rather than gross structural disruption.

Why this matters

N714T is a conservative substitution whose pathogenicity is invisible to crude analysis but clear to AlphaMissense and clinical evidence. The Atlas captures the specific H-bond network involving two distant aspartates (D713 and D771) that the wild-type asparagine maintained — a structural feature that fine-grained drug discovery can target.
Therapeutic Strategy Handoff · prediction

Feed this card to Wolfram Intelligence

Download the N714T PDF below and upload it to Wolfram Intelligence to generate therapeutic-strategy proposals — guanidinium mimetics, sigma-1 agonist docking, NAC thiol-capping. NAC is already on the bench-testing list.

Download N714T PDF card ↓Strategies are AI-generated predictions, not validated therapeutics.

UniProt Domain Annotation

Chain1890 · Wolframin
Topological domain653869 · Lumenal