# WFS1 Wolframin — W700R Variant Card

**Molecular Atlas Pilot · RareResearch.AI · Generated by wolfram-variant-card skill**

*Tryptophan → Arginine at position 700. C-terminal ER-lumenal (calcium binding. ClinVar Uncertain significance, AlphaMissense 1.000, DynaMut2 ΔΔG -2.17 kcal/mol (destabilising).*

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## Identity

| Field | Value |
|---|---|
| **Variant** | W700R (p.Tryptophan700Arginine) |
| **DNA change** | c.2098T>A |
| **Gene · Protein** | WFS1 · Wolframin (890 aa) |
| **UniProt** | O76024 · WFS1_HUMAN |
| **ClinVar accession** | VCV002637634 |
| **Amino acid change** | Tryptophan (W) → Arginine (R) |

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## Structural Context

| Field | Value |
|---|---|
| **AlphaFold model** | AF-O76024-F1, v6 |
| **pLDDT at residue 700** | **90.19** — well-folded |
| **Domain** | C-terminal ER-lumenal (calcium binding, calmodulin, chaperone) |
| **Position context** | C-terminal lumenal domain · position 700 projects into the ER lumen |
| **IDR flag** | No — pLDDT above 50 threshold |

**UniProt features at this position:**

  (none catalogued)

> Position 700 sits in the C-terminal lumenal domain (residues 653–869), wolframin's largest soluble region. This domain projects into the ER lumen and is implicated in calcium handling, ER stress sensing, and protein–protein interactions with ATF6 and Na+/K+ ATPase β1. The wild-type residue is bulky aromatic (tryptophan — indole ring); the mutant is positively charged (arginine — guanidinium, strong H-bond donor). The chemistry shift implies altered local packing, hydrogen-bonding, and/or electrostatics at this site.

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## Computational Predictions

### AlphaMissense
| Field | Value |
|---|---|
| am_pathogenicity | **0.9996** |
| am_class | **likely pathogenic** |
| Interpretation | Likely pathogenic (threshold 0.564) |

### DynaMut2
| Field | Value |
|---|---|
| ΔΔG (kcal/mol) | **-2.17 (Destabilising)** |
| Job ID | 178090203217 |
| Result URL | https://biosig.lab.uq.edu.au/dynamut2/results_prediction/178090203217 |

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## Clinical Evidence

| Field | Value |
|---|---|
| Classification | **Uncertain significance** |
| Review status | criteria provided, single submitter |
| Last evaluated | 2023/10/09 00:00 |
| Inheritance | Inheritance pattern not specified in ClinVar entry; WFS1 has both AD and AR presentations. |
| WFS1 variant landscape | W700R is 1 of ~326 pathogenic-spectrum variants in WFS1 (out of 2,243 catalogued in ClinVar) |

(no conditions catalogued)

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## Research Path Decision Tree

```
ΔΔG < 2  + binding site affected   →  CATEGORY 3 — docking experiments
ΔΔG 2–4                            →  CATEGORY 2 — pharmacological chaperones
ΔΔG > 4                            →  CATEGORY 1 — gene therapy
pLDDT < 50                         →  CATEGORY 5 — IDR, experimental only
Stable fold + functional site hit  →  CATEGORY 4 — site-specific docking
```

## Final Schema Categorization

**Category 2 — Moderately Destabilizing**

<strong>Category 2 — Moderately Destabilizing</strong><br/><br/>|ΔΔG|=2.17 in the 2–4 range. Pharmacological chaperone candidate.



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## Files in this folder

- `AF-O76024-F1-model_v6.pdb` — AlphaFold structure
- `W700R_molstar_viewer.html` — interactive 3D viewer (auto-highlights position 700 with ball-and-stick + neighbors within 5Å)
- `W700R_variant_card.md` — this card (source of truth)
- `W700R_variant_card.html` — styled printable card
- `W700R_dynamut2_summary.html` — clean offline DynaMut2 result card
- `dynamut2_result.json` — structured result data
- `dynamut2_result_page.html` — local snapshot of the Biosig result page (asset URLs absolutized)
- `W700R_wildtype_interactions.pse` / `W700R_mutant_interactions.pse` — PyMOL sessions

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*Generated by wolfram-variant-card skill · RareResearch.AI Molecular Atlas*
*Every assumption documented. Every score sourced.*