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C733G

Category 3/4 — Most DruggableLikely pathogenicLumenal · predictedσ-1 candidateEditorial
CysteineGlycine at position 733 · C-terminal lumenal domain (653-869) · WFS1 (Wolframin)

Cysteine → Glycine at position 733 in wolframin's C-terminal lumenal domain. ClinVar Likely pathogenic for Wolfram syndrome 1. AlphaMissense 0.912, DynaMut2 ΔΔG -1.15 kcal/mol (destabilising). Cysteine-removal variant with potential disulfide partner C765 in spatial proximity.

Interactive 3D Structure

Wild-type reference
Wild-type C733 — hydrogen bond to W730
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DynaMut2 mutant · C733G
Mutant G733 — hydrogen bond to P764 lost (2 contacts lost)
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Bond changes · DynaMut2 interaction analysis

2 lost0 gained7 preserved
Interaction typeWild-type partnerMutant partnerStatus
Hydrogen bondD729D729Preserved
Hydrogen bondW730W730Preserved
Hydrogen bondP764Lost
Polar contactD729D729Preserved
Polar contactW730W730Preserved
Polar contactM731M731Preserved
Polar contactC765C765Preserved
Van der WaalsM731M731Preserved
HydrophobicC765Lost

Lost / gained / preserved interatomic contacts at the variant residue, from the DynaMut2 (Arpeggio) interaction analysis of the wild-type and energy-minimized mutant structures.

Computational Predictions

DynaMut2 ΔΔG
-1.15kcal/mol
Destabilising — moderate
AlphaMissense
0.912
LPath
AlphaFold pLDDT
89
model confidence
Schema
Cat 3/4
Category 3/4 — Most Druggable
ΔΔG confidence: Standard confidence · Lumenal

This variant is in a water-facing region, which is the regime the stability predictor was built and benchmarked for. Ordinary predictor error still applies.

Clinical Evidence

ClinVar classificationLikely pathogenic
Review statuscriteria provided, single submitter
Associated conditionsWolfram syndrome 1
InheritanceWolfram syndrome 1 (AR) documented.
Population frequency (gnomAD v4)Absent from gnomAD v4
cDNA changec.2197T>G
ClinVar accessionVCV001264333
Last evaluated1/01/01 00:00

Not observed in ~730k individuals — consistent with a rare allele (ACMG PM2_supporting).

Classified for1★ unverified submission

ClinVar classifies this variant as Likely pathogenic for Wolfram syndrome (classic) (autosomal recessive, OMIM 222300). Classic Wolfram syndrome is recessive: a single copy does not produce it, and this classification says nothing about a carrier's own risk.

  • Wolfram syndrome (classic)autosomal recessive · OMIM 222300submitted as: Wolfram syndrome 1
  • This rests on a single submitter (1★). Treat the conditions above as submitted, not as documented phenotypes.
  • Phenotype scope is interpretation of submitted records. The computed values on this card (AlphaMissense, DynaMut2 ΔΔG, pLDDT) are measurements of the model, not of a patient.
  • Presentation cannot be generalised from neighbouring variants: one nucleotide over can present very differently. Structural similarity supports a mechanistic hypothesis, never a phenotype claim.

Review status: 1★ single submitter. ClinVar "conditions" is the union of all submissions; 0–1★ entries are submitted conditions, not documented phenotypes.

Population frequency
Global (all ancestries)
Absent from gnomAD v4
Homozygotes
Not available

No population breakdown — the variant is absent from gnomAD v4, so no ancestry group has an observed frequency.

No homozygotes — the variant is absent from gnomAD v4 altogether.

Source: gnomAD r4, retrieved 2026-08-21. Values are allele frequencies. The carrier estimate is derived from the allele frequency (Hardy-Weinberg, ~2·AF) and is an approximation, not a published figure — where a published carrier frequency exists it outranks this column and is cited on the card.

Structural Context

Position 733 sits in wolframin's C-terminal lumenal domain. The AlphaFold model places C733 within 5 Å of ARG732 (2.4 Å — same R732 as G736R neighbor), LEU734 (2.5 Å), CYS765 (3.5 Å — possible disulfide partner!), TRP730 (3.7 Å), and ASP729 (4.0 Å).

The C733-C765 distance of 3.5 Å is consistent with a possible disulfide bond in the oxidizing ER lumen. The Atlas's C690R/C690Y cards discuss a similar C673-C690 inferred disulfide; C733-C765 may be a second analogous structural disulfide in the lumenal domain.

Replacing C733 with glycine eliminates this potential disulfide entirely. The fold loses a major structural anchor. The |ΔΔG| of 1.15 reflects this — meaningful destabilization for a single substitution. AlphaMissense's 0.912 + Wolfram 1 clinical evidence confirm severe functional consequence.

Amino-acid chemistry
Cysteine (C) → Glycine (G) — thiol-bearing residue replaced by smallest amino acid. Loss of disulfide-bond potential plus loss of side chain entirely.
Position in the protein
C-terminal lumenal domain · position 733 in the ER lumen (pLDDT 88).

Druggability Assessment

Category 3/4 — Most Druggable. |ΔΔG| = 1.15 — fold survives at meaningful cost. AlphaMissense 0.912 + Wolfram 1 confirm severe functional consequence.

Mechanism is loss of an inferred C733-C765 disulfide bond. Therapeutic strategy: site-directed at the C765 partner site, potentially with a small molecule that bridges the two former cysteines.

Why this matters

C733-C765 is the second possible disulfide pair identified in the Atlas (after C673-C690). The lumenal domain appears to use multiple structural disulfides; variants at any of these cysteines disrupt the fold.
Therapeutic Strategy Handoff · prediction

Feed this card to Wolfram Intelligence

Download the C733G PDF below and upload it to Wolfram Intelligence to generate therapeutic-strategy proposals — guanidinium mimetics, sigma-1 agonist docking, NAC thiol-capping. NAC is already on the bench-testing list.

Download C733G PDF card ↓Strategies are AI-generated predictions, not validated therapeutics.

UniProt Domain Annotation

Chain1890 · Wolframin
Topological domain653869 · Lumenal